Monica Valecha

Links

Publications

Full list of publications see Google Scholar
Recent publications include
[1] J. Almeida, A. Pérez-Figueroa, J. M. Alves, et al. "Single-cell
mtDNA heteroplasmy in colorectal cancer". Eng. In: _Genomics_ 114.2
(Mar. 2022), p. 110315. ISSN: 1089-8646. DOI:
10.1016/j.ygeno.2022.110315. PMID: 35181467.
[2] J. M. Alves, N. Estévez-Gómez, M. Valecha, et al. "Comparative
analysis of capture methods for genomic profiling of circulating tumor
cells in colorectal cancer". Eng. In: _Genomics_ 114.6 (Nov. 2022), p.
110500. ISSN: 1089-8646. DOI: 10.1016/j.ygeno.2022.110500. PMID:
36202322.
[3] J. M. Alves, S. Prado-López, L. Tomás, et al. "Clonality and timing
of relapsing colorectal cancer metastasis revealed through whole-genome
single-cell sequencing". Eng. In: _Cancer letters_ 543 (Sep. 2022), p.
215767. ISSN: 1872-7980. DOI: 10.1016/j.canlet.2022.215767. PMID:
35688262.
[4] N. Borgsmüller, M. Valecha, J. Kuipers, et al. "Single-cell
phylogenies reveal changes in the evolutionary rate within cancer and
healthy tissues". Eng. In: _Cell genomics_ 3.9 (Sep. 2023), p. 100380.
ISSN: 2666-979X. DOI: 10.1016/j.xgen.2023.100380. PMID: 37719146.
[5] R. Ding, P. Chen, B. K. Rajendran, et al. "Molecular landscape and
subtype-specific therapeutic response of nasopharyngeal carcinoma
revealed by integrative pharmacogenomics". Eng. In: _Nature
communications_ 12.1 (May. 2021), p. 3046. ISSN: 2041-1723. DOI:
10.1038/s41467-021-23379-3. PMID: 34031426.
[6] M. Edrisi, M. V. Valecha, S. B. V. Chowdary, et al. "Phylovar:
toward scalable phylogeny-aware inference of single-nucleotide
variations from single-cell DNA sequencing data". Eng. In:
_Bioinformatics (Oxford, England)_ 38.Suppl 1 (Jun. 2022), pp.
i195-i202. ISSN: 1367-4811. DOI: 10.1093/bioinformatics/btac254. PMID:
35758771.
[7] S. Kang, N. Borgsmüller, M. Valecha, et al. "SIEVE: joint inference
of single-nucleotide variants and cell phylogeny from single-cell DNA
sequencing data". Eng. In: _Genome biology_ 23.1 (Nov. 2022), p. 248.
ISSN: 1474-760X. DOI: 10.1186/s13059-022-02813-9. PMID: 36451239.
[8] K. Miao, J. H. Lei, M. V. Valecha, et al. "NOTCH1 activation
compensates BRCA1 deficiency and promotes triple-negative breast cancer
formation". Eng. In: _Nature communications_ 11.1 (Jun. 2020), p. 3256.
ISSN: 2041-1723. DOI: 10.1038/s41467-020-16936-9. PMID: 32591500.
[9] A. Munshi, P. Khetarpal, S. Das, et al. "Apert's syndrome: Study by
whole exome sequencing". Eng. In: _Genes & diseases_ 5.2 (Jun. 2018),
pp. 119-122. ISSN: 2352-3042. DOI: 10.1016/j.gendis.2017.07.008. PMID:
30258940.
[10] M. Valecha and D. Posada. "Somatic variant calling from
single-cell DNA sequencing data". Eng. In: _Computational and
structural biotechnology journal_ 20 (Jun. 2022), pp. 2978-2985. ISSN:
2001-0370. DOI: 10.1016/j.csbj.2022.06.013. PMID: 35782734.
[11] X. Xu, E. Chen, L. Mo, et al. "BRCA1 represses DNA replication
initiation through antagonizing estrogen signaling and maintains genome
stability in parallel with WEE1-MCM2 signaling during pregnancy". Eng.
In: _Human molecular genetics_ 28.5 (Mar. 2019), pp. 842-857. ISSN:
1460-2083. DOI: 10.1093/hmg/ddy398. PMID: 30445628.
[12] A. Zhang, L. Wang, J. H. Lei, et al. "SB Digestor: a tailored
driver gene identification tool for dissecting heterogeneous Sleeping
Beauty transposon-induced tumors". Eng. In: _International journal of
biological sciences_ 19.6 (Mar. 2023), pp. 1764-1777. ISSN: 1449-2288.
DOI: 10.7150/ijbs.81317. PMID: 37063417.